What’s Changed

• bump version to 1.2.0dev by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/25
• AWS full test manual dispatch by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/26
• Update spades resources and usage instructions by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/27
• Important! Template update for nf-core/tools v3.1.0 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/28
• Important! Template update for nf-core/tools v3.1.1 by @mirpedrol in https://github.com/nf-core/denovotranscript/pull/29
• Fix ch_transcripts and ch_pubids for AWS by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/30
• Fix transrate dependencies issue by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/32
• Bump to version 1.2.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/33
• Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/36
• Release version 1.2.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/34

New Contributors

• @mirpedrol made their first contribution in https://github.com/nf-core/denovotranscript/pull/29

Full Changelog: https://github.com/nf-core/denovotranscript/compare/1.1.0…1.2.0

What’s Changed

• Post-release DOI and changelog update by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/10
• Post-release DOI and chagelog update by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/11
• Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/14
• Fix skip_assembly by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/15
• Increase trinity resources by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/16
• bump pipeline version to 1.1.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/17
• Fix Salmon quantification for skip_assembly mode by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/21
• Update Trinity module and fix dependency issue by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/24
• Release version 1.1.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/18

New Contributors

• @nf-core-bot made their first contribution in https://github.com/nf-core/denovotranscript/pull/14

Full Changelog: https://github.com/nf-core/denovotranscript/compare/1.0.0…1.1.0

[1.0.0] - 2024-08-15

Initial release of nf-core/denovotranscript, a pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq.

Contributors

@avani-bhojwani, @timslittle