This is the development version of the pipeline.
This pipeline is archived and no longer maintained.
Archived pipelines can still be used, but may be outdated and will not receive bugfixes.
This pipeline uses DSL1. It will not work with Nextflow versions after
Launch development version https://github.com/nf-core/ddamsproteomics 22.10.6.
Learn more.
nf-core/ddamsproteomics
Quantitative shotgun MS proteomics as done in Lehtio lab
This pipeline is no longer being maintained
Please see nf-core/quantms for a more up to date pipeline that covers much of the same functionality.
Introduction
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.
Documentation
The nf-core/ddamsproteomics pipeline comes with documentation about the pipeline, found in the docs/ directory: